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Modernising drug substance filling
30/03/2026

Modernising drug substance filling

Closing the Gap in the Annex 1 Era

Alan Kelly

SME Aseptic Fill Finish

Alan is a seasoned Process Engineer with over 25 years' experience in various engineering roles within the pharmaceutical industry. As a Subject Matter Expert, Alan has collaborated with numerous international clients in the pharmaceutical and medtech sectors.

EU GMP Annex 1 has sharpened the focus on contamination control across the industry. However, its impact on drug substance (DS) filling is proving particularly significant.

The challenge

Many legacy DS filling operations were designed at a time when robust procedures, cleanrooms and skilled operators were considered enough to manage risk. In practice, many of these systems still perform well today.

However, Annex 1 - supported by Annex 2 - has shifted the regulatory conversation. The emphasis is no longer on outcomes alone, but on process design, human dependency, and long term sustainability.

Alan Kelly
Alan Kelly background

“The message from regulators is increasingly clear. Prevention through engineered controls is more effective than reliance on procedures, monitoring, or operator behaviour alone."

Alan Kelly

SME Aseptic Fill Finish

Reducing exposure

That doesn’t mean open DS filling is suddenly non compliant. But it does mean it must be risk assessed, justified and actively managed, with a credible plan to reduce exposure over time.

“At PM Group, we’re seeing clients grapple with a very practical challenge. How to maintain supply and operational continuity today, while moving decisively toward Annex 1 aligned future states,” said Alan.

The answer is rarely a single step change. Instead, the most successful strategies apply ICH Q9 Quality Risk Management to clearly distinguish between:

  • risks that can be acceptably controlled in the short term, and
  • design limitations that are no longer defensible as a long term solution.


Strengthening interim controls

In practice, this often means strengthening interim controls. It involves error proofing manual set ups and reducing subjectivity in aseptic technique. It includes improving equipment hygiene and cleanability while simultaneously planning for engineered protection.

Improving consistency

On new projects and upgrades, barrier technologies and closed filling systems are now the norm. These include closed RABS, automated closed bottle filling and closed single use bag and bottle systems.

They reduce the need for operators. They also improve consistency and help to maintain low bioburden. Industry benchmarks show these solutions are no longer ideas for the future. They are quickly becoming standard practice.

Annex 1 isn’t a cliff edge, but it is a compass. Organisations need to combine robust interim controls with a clearly articulated modernisation roadmaps. Ultimately, companies who adapt will be best placed to prove regulatory intent and protect supply. The end goal? To build DS filling operations fit for the next decade.

Contact us for more information

Alan Kelly

SME Aseptic Fill Finish

Alan Kelly